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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26303663_26304062_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26303663 - 26304062
Intron Length:
400

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
ATTTATTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
ACTTTACTAATT
Flanking Amino Acid:
LHRGVHHYTGLLKLQERVLN
Intron Amino Acid Position:
839

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.1
76.2
34.7
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
81.8
0.72
0.8
74.3
40.5
Minor 5ss
37
-1.5
2.8
43.1
43.9
Minor BPS
50.5
0.09
1.9
71.75
39.4

Associated Gene:

Gene:
HTT
Ensembl Gene ID:
ENSAPLG00000007777
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008199
26276572 - 26355318
78747