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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26304164_26305583_F

Intron Information:

Intron Rank:
20
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
26304164 - 26305583
Intron Length:
1420

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGTATG
5'SS Class:
strong_major
3'SS Sequence:
AATTGTCGTTAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
CAGTTCTGAATA
Flanking Amino Acid:
VRHVAASSLMRLVPKLFYNC
Intron Amino Acid Position:
872

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
79.6
35.4
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
58.9
0.2
1.2
61.3
44.1
Minor 5ss
40
-1.1
2.7
50.1
46.4
Minor BPS
57
0.21
1.4
60.66
39.8

Associated Gene:

Gene:
HTT
Ensembl Gene ID:
ENSAPLG00000007777
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008199
26276572 - 26355318
78747