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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26306766_26306971_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26306766 - 26306971
Intron Length:
206

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTTTT
5'SS Class:
major
3'SS Sequence:
GTTGACTTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCATAAT
U12 Branch Point Sequence:
TGATTCATAATT
Flanking Amino Acid:
LTISTTRALTFGCCEALCLL
Intron Amino Acid Position:
962

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1
78
32.5
Major BPS
75.2
0.63
1.1
74.5
36.6
Major PPT
78
0.63
0.9
73.6
41.5
Minor 5ss
42.9
-0.8
3
63.8
41.6
Minor BPS
63.7
0.51
1.6
78.41
37.6

Associated Gene:

Gene:
HTT
Ensembl Gene ID:
ENSAPLG00000007777
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008199
26276572 - 26355318
78747