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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26307049_26309235_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26307049 - 26309235
Intron Length:
2187

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTTCC
5'SS Class:
major
3'SS Sequence:
ATTATACTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
CATTCCAAAATT
Flanking Amino Acid:
VCTWTVGWHCGVSQPNSSDE
Intron Amino Acid Position:
987

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
68.5
37.5
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
73.2
0.52
0.9
64
42.3
Minor 5ss
47.1
-0.3
2.4
53.9
43.4
Minor BPS
53.8
0.2
2
73.88
43.1

Associated Gene:

Gene:
HTT
Ensembl Gene ID:
ENSAPLG00000007777
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008199
26276572 - 26355318
78747