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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26314430_26314989_F

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26314430 - 26314989
Intron Length:
560

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGAGAT
5'SS Class:
strong_major
3'SS Sequence:
TCTGCTTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
AGTGACTTAATT
Flanking Amino Acid:
ELATLQDIGKCVEEILGYLK
Intron Amino Acid Position:
1228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
75.3
34.7
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
80.5
0.69
0.8
73
37.3
Minor 5ss
31
-2.2
3.6
46.7
48.6
Minor BPS
63.1
0.49
1.6
76.25
40.3

Associated Gene:

Gene:
HTT
Ensembl Gene ID:
ENSAPLG00000007777
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008199
26276572 - 26355318
78747