About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26315932_26316513_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26315932 - 26316513
Intron Length:
582

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAACTTCT
5'SS Class:
major
3'SS Sequence:
TTTCTCATCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTTCTTAGAGT
Flanking Amino Acid:
VQAEQEHDASGWFDVLQKVS
Intron Amino Acid Position:
1328

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1.2
72.3
40.1
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
82.3
0.73
0.8
77
30.1
Minor 5ss
47.9
-0.2
2.5
59.9
44.5
Minor BPS
58.7
0.35
2
82.48
39.6

Associated Gene:

Gene:
HTT
Ensembl Gene ID:
ENSAPLG00000007777
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008199
26276572 - 26355318
78747