About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26316888_26317840_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26316888 - 26317840
Intron Length:
953

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTACC
5'SS Class:
major
3'SS Sequence:
ATTCTCTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
ACTTTTTTAACA
Flanking Amino Acid:
VNYCLLDSDQVFIGFVLKQF
Intron Amino Acid Position:
1409

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.57
1.2
70.9
39.4
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
84.6
0.78
0.7
81.9
29.3
Minor 5ss
32
-2.1
2.7
38.2
39.5
Minor BPS
75.6
0.8
1.1
76.76
34.5

Associated Gene:

Gene:
HTT
Ensembl Gene ID:
ENSAPLG00000007777
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008199
26276572 - 26355318
78747