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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26317897_26318640_F

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26317897 - 26318640
Intron Length:
744

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAA
U12 Branch Point Sequence:
TCAAACTTGACA
Flanking Amino Acid:
QFEYIEVGQFRESEAIIPNI
Intron Amino Acid Position:
1427

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
79.7
35.4
Major BPS
74.2
0.6
0.9
75.7
28
Major PPT
93.6
0.98
0.7
92.3
26.6
Minor 5ss
47.1
-0.3
2.6
65.5
45.8
Minor BPS
57.7
0.24
1.6
65.16
40.8

Associated Gene:

Gene:
HTT
Ensembl Gene ID:
ENSAPLG00000007777
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008199
26276572 - 26355318
78747