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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26318790_26319339_F

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26318790 - 26319339
Intron Length:
550

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATTAAA
5'SS Class:
major
3'SS Sequence:
CTTGCCGTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAT
U12 Branch Point Sequence:
TCATGCTGAAAC
Flanking Amino Acid:
MASGRKAVTHAIPALQPIVH
Intron Amino Acid Position:
1477

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
77.8
31.4
Major BPS
77.2
0.67
1.2
79.6
35.6
Major PPT
72.7
0.51
0.9
69.5
36.8
Minor 5ss
35.3
-1.7
2.7
39.2
40.4
Minor BPS
49
-0
2
61.52
43.3

Associated Gene:

Gene:
HTT
Ensembl Gene ID:
ENSAPLG00000007777
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008199
26276572 - 26355318
78747