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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26321561_26323861_F

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26321561 - 26323861
Intron Length:
2301

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGCTATA
5'SS Class:
major
3'SS Sequence:
TTTTCTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TTTTCTTTTACA
Flanking Amino Acid:
IILPMLAKQQMHIDSHDALG
Intron Amino Acid Position:
1562

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.2
0.31
1.4
70.1
42
Major BPS
78.6
0.71
1
78.6
31
Major PPT
95.6
1.03
0.5
91.4
20.1
Minor 5ss
39.8
-1.1
2.9
51.7
44.8
Minor BPS
77.6
0.86
1.5
87.29
30.4

Associated Gene:

Gene:
HTT
Ensembl Gene ID:
ENSAPLG00000007777
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008199
26276572 - 26355318
78747