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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26323985_26324586_F

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26323985 - 26324586
Intron Length:
602

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCAAG
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTTTGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
ACTCTAACAATC
Flanking Amino Acid:
RSMFVTPKTMASVSTVQLWI
Intron Amino Acid Position:
1603

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
70.6
41.3
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
71.4
0.48
1
65.8
45.3
Minor 5ss
38.9
-1.3
2.9
45.6
43.8
Minor BPS
40.6
-0.7
1.8
48.44
34.8

Associated Gene:

Gene:
HTT
Ensembl Gene ID:
ENSAPLG00000007777
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008199
26276572 - 26355318
78747