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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26324826_26327170_F

Intron Information:

Intron Rank:
38
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26324826 - 26327170
Intron Length:
2345

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTGAT
U12 Branch Point Sequence:
TTTTTTTTTAAG
Flanking Amino Acid:
AKYLPEETFSRFLLQLVGIL
Intron Amino Acid Position:
1682

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.9
0.9
80.5
35
Major BPS
81.2
0.78
1.1
71.4
45.1
Major PPT
88.4
0.86
0.9
94.6
18.5
Minor 5ss
48
-0.2
2.5
67.3
43.8
Minor BPS
56.3
0.05
1.8
67.7
39.9

Associated Gene:

Gene:
HTT
Ensembl Gene ID:
ENSAPLG00000007777
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008199
26276572 - 26355318
78747