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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26327314_26330851_F

Intron Information:

Intron Rank:
39
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26327314 - 26330851
Intron Length:
3538

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATACTT
5'SS Class:
strong_major
3'SS Sequence:
TTATTATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
GTTACTCTAATA
Flanking Amino Acid:
LMCLIHIFKSGMFRRITAAA
Intron Amino Acid Position:
1730

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
77.4
37.4
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
87.5
0.84
0.8
85.6
33.6
Minor 5ss
38
-1.4
3.3
57.1
47
Minor BPS
57.8
0.24
1.7
69.66
36.5

Associated Gene:

Gene:
HTT
Ensembl Gene ID:
ENSAPLG00000007777
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008199
26276572 - 26355318
78747