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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26332400_26333916_F

Intron Information:

Intron Rank:
41
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26332400 - 26333916
Intron Length:
1517

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTC|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
TTTTCCCTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTACCGGAATC
Flanking Amino Acid:
GALILFCDYVCQNLHDSEHL
Intron Amino Acid Position:
1847

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1.3
80.5
34.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
87.2
0.84
0.6
85.9
21.1
Minor 5ss
47.7
-0.2
2.8
67.9
37.2
Minor BPS
49.1
-0
2.1
66.59
38.9

Associated Gene:

Gene:
HTT
Ensembl Gene ID:
ENSAPLG00000007777
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008199
26276572 - 26355318
78747