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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26334097_26335062_F

Intron Information:

Intron Rank:
42
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26334097 - 26335062
Intron Length:
966

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTTTA
5'SS Class:
major
3'SS Sequence:
TTTCATCATTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCATCATT
Flanking Amino Acid:
IQSRCENLAAPTTLKKTLQC
Intron Amino Acid Position:
1907

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1.1
77.4
33.6
Major BPS
100
1.24
0.5
100
0
Major PPT
76.2
0.59
0.9
74.8
34.8
Minor 5ss
46.7
-0.3
2.8
68.1
42.7
Minor BPS
58.3
0.34
2
84.17
37

Associated Gene:

Gene:
HTT
Ensembl Gene ID:
ENSAPLG00000007777
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008199
26276572 - 26355318
78747