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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26340115_26340311_F

Intron Information:

Intron Rank:
47
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26340115 - 26340311
Intron Length:
197

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAATAGAA
5'SS Class:
major
3'SS Sequence:
TCTTTTCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATTCAGT
Flanking Amino Acid:
AYWKKLSDIFGDEAMYRSVM
Intron Amino Acid Position:
2150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1
65.9
33.1
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
87.5
0.84
0.6
81.2
30.9
Minor 5ss
30
-2.3
3.3
35.1
43.3
Minor BPS
52
0.14
2.3
79.5
42.4

Associated Gene:

Gene:
HTT
Ensembl Gene ID:
ENSAPLG00000007777
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008199
26276572 - 26355318
78747