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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26342538_26343777_F

Intron Information:

Intron Rank:
51
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26342538 - 26343777
Intron Length:
1240

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTCTG
5'SS Class:
major
3'SS Sequence:
TATATTTCATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TAATCTTTATAT
Flanking Amino Acid:
VNSYTRVPPLVWKLGWSPKP
Intron Amino Acid Position:
2353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
67.1
43.8
Major BPS
80
0.75
1
78.6
31
Major PPT
76
0.59
1
75.1
39.3
Minor 5ss
44.1
-0.6
2.8
55.2
43.3
Minor BPS
60
0.39
1.7
75.49
40.8

Associated Gene:

Gene:
HTT
Ensembl Gene ID:
ENSAPLG00000007777
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008199
26276572 - 26355318
78747