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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26345982_26346345_F

Intron Information:

Intron Rank:
54
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26345982 - 26346345
Intron Length:
364

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGGTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATCTGCTTAAAT
Flanking Amino Acid:
RNKALKALDTRFGRKLSVIR
Intron Amino Acid Position:
2480

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
89.8
23.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
84.4
0.77
0.8
81.2
36.5
Minor 5ss
46.2
-0.4
2.8
67.4
43.6
Minor BPS
63.4
0.5
1.9
79.57
42.3

Associated Gene:

Gene:
HTT
Ensembl Gene ID:
ENSAPLG00000007777
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008199
26276572 - 26355318
78747