Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26347624_26347821_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

26347624 - 26347821

Intron Length:

198

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGTCTTAT

5'SS Class:

major

3'SS Sequence:

TTGTGCTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAC

U12 Branch Point Sequence:

GCCATTTTAACT

Flanking Amino Acid:

SSPPTSPINTRKHRAGVDIH

Intron Amino Acid Position:

2598

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.52

1.1

72.7

34.5

Major BPS

89.7

0.98

0.7

89.9

Major PPT

82.9

0.74

0.9

77.1

37.1

Minor 5ss

48.1

-0.2

2.5

66.4

45.1

Minor BPS

61.2

0.43

1.3

68.35

42.9

Associated Gene:

Gene:

HTT

Ensembl Gene ID:

ENSAPLG00000007777

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008199

26276572 - 26355318

78747