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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26348825_26350260_F

Intron Information:

Intron Rank:
59
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26348825 - 26350260
Intron Length:
1436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTGTATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTGACTTTAATA
Flanking Amino Acid:
TCKAAAVLGMDKAVAEPVSR
Intron Amino Acid Position:
2694

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
82.5
29.7
Major BPS
80
0.75
1
78.6
31
Major PPT
67.5
0.39
1
66.9
43.8
Minor 5ss
35.3
-1.7
3.1
46.4
43
Minor BPS
72.5
0.7
1.2
75.68
36.1

Associated Gene:

Gene:
HTT
Ensembl Gene ID:
ENSAPLG00000007777
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008199
26276572 - 26355318
78747