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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26350452_26351235_F

Intron Information:

Intron Rank:
60
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26350452 - 26351235
Intron Length:
784

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGATTT
5'SS Class:
major
3'SS Sequence:
TGCTTATTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TTTTGCTTATTT
Flanking Amino Acid:
YLLSNLRGVAHCVNVHNQQH
Intron Amino Acid Position:
2757

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1
75.6
34.8
Major BPS
84
0.85
0.9
75
39.9
Major PPT
82.6
0.73
0.9
76.3
36.8
Minor 5ss
46.1
-0.4
3.1
71.1
39.8
Minor BPS
65.7
0.57
2
87.57
38.6

Associated Gene:

Gene:
HTT
Ensembl Gene ID:
ENSAPLG00000007777
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008199
26276572 - 26355318
78747