About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26351790_26351928_F

Intron Information:

Intron Rank:
62
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26351790 - 26351928
Intron Length:
139

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTACT
5'SS Class:
major
3'SS Sequence:
TATCTTGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
CATTTTGTAACA
Flanking Amino Acid:
LGLMLTCMYTGKEKISPSRS
Intron Amino Acid Position:
2867

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
79
34.3
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
79
0.65
0.9
77.4
36.6
Minor 5ss
44.5
-0.6
2.5
61.4
42.8
Minor BPS
54.5
0.14
2
67.28
39.8

Associated Gene:

Gene:
HTT
Ensembl Gene ID:
ENSAPLG00000007777
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008199
26276572 - 26355318
78747