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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26353490_26354161_F

Intron Information:

Intron Rank:
64
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26353490 - 26354161
Intron Length:
672

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTTT
5'SS Class:
strong_major
3'SS Sequence:
ATATTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
ATGTCTTTATTC
Flanking Amino Acid:
PQFMATVVYKVFQTLHTTGQ
Intron Amino Acid Position:
2957

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
81.4
33
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
80.3
0.68
0.9
74.5
35.5
Minor 5ss
42.7
-0.8
3.4
64.6
46.7
Minor BPS
61.9
0.35
1.6
68.12
38.2

Associated Gene:

Gene:
HTT
Ensembl Gene ID:
ENSAPLG00000007777
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008199
26276572 - 26355318
78747