About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26354323_26355104_F

Intron Information:

Intron Rank:
65
Intron Class:
minor-like
Intron Phase:
2
Intron Coordinates:
26354323 - 26355104
Intron Length:
782

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTATCCTAA
5'SS Class:
weak_minor
3'SS Sequence:
ACATATATCTCAG|T
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
ATGACCTTAACA
Flanking Amino Acid:
SASTSQWISAILPHIISRMG
Intron Amino Acid Position:
3010

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.7
0.16
1.3
56.7
38.8
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
67
0.38
1
62.9
41.9
Minor 5ss
75.2
0.85
1.8
76.4
39.7
Minor BPS
77.4
0.86
1.2
78.87
37.2

Associated Gene:

Gene:
HTT
Ensembl Gene ID:
ENSAPLG00000007777
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008199
26276572 - 26355318
78747