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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26395772_26406024_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26395772 - 26406024
Intron Length:
10253

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTTC
5'SS Class:
strong_major
3'SS Sequence:
CGTTTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
TAATGTTTTATG
Flanking Amino Acid:
IKITNMTFQYRKLKCMTDSE
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.3
32.2
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
88.7
0.87
0.7
84
31
Minor 5ss
48.4
-0.1
2.8
67.4
44
Minor BPS
46.2
-0.4
2
52.68
42.7

Associated Gene:

Gene:
MSANTD1
Ensembl Gene ID:
ENSAPLG00000008738
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009086
26381625 - 26415991
34367