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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26435648_26451426_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26435648 - 26451426
Intron Length:
15779

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTGTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
TCATATATATTT
Flanking Amino Acid:
SVRKSKEDKKGSKFGHSVGL
Intron Amino Acid Position:
620

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
80.8
0.69
0.8
80.8
31.3
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
44.8
-0.3
1.9
62.34
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008768
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009160
26433703 - 26451588
17886