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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26483730_26484986_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26483730 - 26484986
Intron Length:
1257

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TGGTTTTCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
TATAAATTAACA
Flanking Amino Acid:
NHVPAHDKKELSYRAREIFT
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.1
1.06
0.7
83.2
30.8
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
82.2
0.73
0.9
76.6
37.7
Minor 5ss
33.5
-1.9
2.9
40.7
45.5
Minor BPS
58.4
0.26
1.8
72.37
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017346
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048110
26480283 - 26500246
19964