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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26489117_26490337_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26489117 - 26490337
Intron Length:
1221

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTACTTCT
5'SS Class:
major
3'SS Sequence:
GTTTTGGTGATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
AATGATTTAATT
Flanking Amino Acid:
EKSNISTPKKLSGKSKSGRS
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.3
73.5
38.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
65.2
0.34
1.1
61.1
44.7
Minor 5ss
44.7
-0.6
2.5
60.7
43.5
Minor BPS
58.6
0.35
1.6
72.28
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017346
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048110
26480283 - 26500246
19964