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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26490492_26491735_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26490492 - 26491735
Intron Length:
1244

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCATAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
CTTTCCATAAAC
Flanking Amino Acid:
KRKENGDYQHDSIQSNGLSY
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.85
0.8
83.1
28.6
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
71.2
0.48
1
67.1
37.3
Minor 5ss
33.3
-1.9
3.4
45.9
43.7
Minor BPS
65.7
0.47
1.8
76.86
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017346
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048110
26480283 - 26500246
19964