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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26516145_26517645_F

Intron Information:

Intron Rank:
140275
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
26516145 - 26517645
Intron Length:
1501

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTCTTA
5'SS Class:
weak_major
3'SS Sequence:
CTCTATTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TGTACCTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.54
1.1
69.5
37.4
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
80.1
0.68
0.8
72.8
37.2
Minor 5ss
62.6
0.42
2.2
73.5
43.1
Minor BPS
76
0.89
1.4
87.53
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025465
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038613
26516025 - 26521674
5650