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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26526171_26527702_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26526171 - 26527702
Intron Length:
1532

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCCAAT
U12 Branch Point Sequence:
CTCTCTCCAATC
Flanking Amino Acid:
LALSGDCLRMHYKSGAGRGS
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
77.9
36.8
Major BPS
59.5
0.24
1.3
68.4
35.9
Major PPT
88.5
0.87
0.6
85
22.5
Minor 5ss
36.4
-1.5
3.3
46.1
43.6
Minor BPS
47.7
-0.1
1.9
58.61
41.2

Associated Gene:

Gene:
HGFAC
Ensembl Gene ID:
ENSAPLG00000009213
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009616
26525893 - 26565227
39335