About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26529683_26533608_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26529683 - 26533608
Intron Length:
3926

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TAATTCCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
GCATCTCTAATT
Flanking Amino Acid:
CLSNIFSRKKWCSTTHNYDR
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
82
26.1
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
79.5
0.66
0.9
70.5
40.6
Minor 5ss
39.7
-1.2
2.8
45.9
43.7
Minor BPS
57
0.3
1.7
70.08
41.1

Associated Gene:

Gene:
HGFAC
Ensembl Gene ID:
ENSAPLG00000009213
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009616
26525893 - 26565227
39335