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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26553277_26555570_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
26553277 - 26555570
Intron Length:
2294

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAAG
5'SS Class:
strong_major
3'SS Sequence:
CATAATTAATTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TAATTAA
U12 Branch Point Sequence:
CTCCCCATAATT
Flanking Amino Acid:
QLGLGPFSYCRNPDEDEKPW
Intron Amino Acid Position:
275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.94
0.8
78.6
37.2
Major BPS
67.7
0.44
1
58.3
38.4
Major PPT
57.8
0.18
1
56.4
43
Minor 5ss
31.6
-2.1
3.1
38.7
46.6
Minor BPS
59.8
0.38
1.7
74.18
42.8

Associated Gene:

Gene:
HGFAC
Ensembl Gene ID:
ENSAPLG00000009213
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009616
26525893 - 26565227
39335