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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26556823_26559533_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26556823 - 26559533
Intron Length:
2711

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTACTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
AATCACAGAATT
Flanking Amino Acid:
VVSAAHCFANSPLKSTITVV
Intron Amino Acid Position:
384

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
71
35.6
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
83.8
0.76
0.8
77.7
35.4
Minor 5ss
43.5
-0.7
2.9
56.9
47.3
Minor BPS
46
-0.2
1.8
64.89
38.5

Associated Gene:

Gene:
HGFAC
Ensembl Gene ID:
ENSAPLG00000009213
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009616
26525893 - 26565227
39335