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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26559674_26561837_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26559674 - 26561837
Intron Length:
2164

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
GTCACTTTATTC
Flanking Amino Acid:
SVFSPTEHDIALIKLKKNGQ
Intron Amino Acid Position:
431

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
88.7
25.1
Major BPS
75.1
0.62
1
65.6
41
Major PPT
85.6
0.8
0.8
80.6
31.4
Minor 5ss
36.4
-1.5
3
48.3
41.8
Minor BPS
51.6
0.03
1.6
59.3
40.4

Associated Gene:

Gene:
HGFAC
Ensembl Gene ID:
ENSAPLG00000009213
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009616
26525893 - 26565227
39335