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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26569332_26571749_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26569332 - 26571749
Intron Length:
2418

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCATCAT
U12 Branch Point Sequence:
TCATCTCTGACA
Flanking Amino Acid:
LVLRKPSPVADCLLMLVYKD
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
76
31.7
Major BPS
75.6
0.64
1.1
76.2
37.5
Major PPT
82.6
0.73
0.8
81.5
30.6
Minor 5ss
31.7
-2.1
3.3
42.5
44.5
Minor BPS
57.7
0.23
1.7
67.64
38.8

Associated Gene:

Gene:
DOK7
Ensembl Gene ID:
ENSAPLG00000009564
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009953
26569098 - 26632070
62973