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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26571981_26575852_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
26571981 - 26575852
Intron Length:
3872

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACCTTT
5'SS Class:
weak_major
3'SS Sequence:
CCTTATTTGATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TCTTCCTTATTT
Flanking Amino Acid:
DVRIRYSLGEVHRFQVFVAP
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1.1
78.8
38.3
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
71.2
0.48
1
68.1
37.3
Minor 5ss
68.6
0.63
2.3
82.3
37.5
Minor BPS
75.3
0.87
1.5
87.57
38.6

Associated Gene:

Gene:
DOK7
Ensembl Gene ID:
ENSAPLG00000009564
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009953
26569098 - 26632070
62973