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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26592090_26594629_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26592090 - 26594629
Intron Length:
2540

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GTATTTTAAACA
Flanking Amino Acid:
LSHTSRQGSGGDDRSLSSSS
Intron Amino Acid Position:
254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.6
33.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
87
0.83
0.6
80.7
31.3
Minor 5ss
29.7
-2.3
3
40.4
45.3
Minor BPS
59.3
0.29
1.6
68.16
38.4

Associated Gene:

Gene:
DOK7
Ensembl Gene ID:
ENSAPLG00000009564
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009953
26569098 - 26632070
62973