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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26644098_26644439_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26644098 - 26644439
Intron Length:
342

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTATA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCCTGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTTGTTTTATTT
Flanking Amino Acid:
EEKTKELGYKVKKHLQDLSS
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
88.8
25
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
72.3
0.5
1
66.6
40.6
Minor 5ss
45.4
-0.5
2.5
59.5
45.1
Minor BPS
59.9
0.39
1.6
78.46
39

Associated Gene:

Gene:
LRPAP1
Ensembl Gene ID:
ENSAPLG00000009747
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010173
26643938 - 26652508
8571