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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26644617_26645341_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26644617 - 26645341
Intron Length:
725

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTGTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTGTATTTATT
Flanking Amino Acid:
FTEKELESFREELKHFEAKI
Intron Amino Acid Position:
272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
78
38.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
78
0.63
0.9
77.2
36.9
Minor 5ss
34.7
-1.7
2.6
34.1
41.4
Minor BPS
50.2
0.09
2
76.28
40.5

Associated Gene:

Gene:
LRPAP1
Ensembl Gene ID:
ENSAPLG00000009747
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043072
26643853 - 26652508
8656
ENSAPLT00000010173
26643938 - 26652508
8571