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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_2668100_2689874_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2668100 - 2689874
Intron Length:
21775

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTATAT
U12 Branch Point Sequence:
TTTGCTACAGTT
Flanking Amino Acid:
GTRMNANDVQALLDTQNLLR
Intron Amino Acid Position:
328

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
86.4
23.9
Major BPS
61.5
0.29
1.3
61
45.5
Major PPT
93.4
0.98
0.7
92.3
26.6
Minor 5ss
41.2
-1
3
57.8
46.8
Minor BPS
45
-0.3
2
68.83
42.7

Associated Gene:

Gene:
NDST3
Ensembl Gene ID:
ENSAPLG00000014790
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015449
2666981 - 2734558
67578