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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26687653_26687869_F

Intron Information:

Intron Rank:
137967
Intron Class:
major
Intron Phase:
Intron Coordinates:
26687653 - 26687869
Intron Length:
217

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTAAG
5'SS Class:
major
3'SS Sequence:
ATATTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
CATTTCTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
72.5
38.4
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
83.5
0.75
0.8
77.9
35.6
Minor 5ss
41.2
-1
2.5
50.7
45.8
Minor BPS
79.6
0.92
1.1
80.05
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024262
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047513
26687583 - 26688906
1324
ENSAPLT00000028846
26687583 - 26691165
3583