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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26755243_26777923_F

Intron Information:

Intron Rank:
140135
Intron Class:
major
Intron Phase:
Intron Coordinates:
26755243 - 26777923
Intron Length:
22681

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTATTCATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTGTTTTTATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
42.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
84.6
0.78
0.7
81
29.9
Minor 5ss
37.8
-1.4
3
46.8
48.5
Minor BPS
60.6
0.31
1.5
68.94
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025362
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046021
26754957 - 26849026
94070