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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26772682_26776481_F

Intron Information:

Intron Rank:
140133
Intron Class:
major
Intron Phase:
Intron Coordinates:
26772682 - 26776481
Intron Length:
3800

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTAGGTGTT
5'SS Class:
major
3'SS Sequence:
ATTTACTTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTTATATTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.9
0.4
1.2
69.1
41.9
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
79.7
0.67
0.8
73.7
36
Minor 5ss
39.2
-1.2
3.7
57.9
46.7
Minor BPS
62.8
0.48
1.7
83.27
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025362
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025217
26772242 - 26777729
5488