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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26831572_26833749_F

Intron Information:

Intron Rank:
140128
Intron Class:
major
Intron Phase:
Intron Coordinates:
26831572 - 26833749
Intron Length:
2178

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTGTC
5'SS Class:
major
3'SS Sequence:
GTTTTTCTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTACAT
U12 Branch Point Sequence:
ATGTGGTGGATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1.1
73.5
35.7
Major BPS
67.6
0.44
1.2
75
40
Major PPT
84.9
0.79
0.7
77.9
36.6
Minor 5ss
39.7
-1.2
3.1
52.8
44.4
Minor BPS
40.3
-0.7
2.4
52.47
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025362
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018029
26831132 - 26833983
2852