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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_27020520_27021683_R

Intron Information:

Intron Rank:
134904
Intron Class:
major
Intron Phase:
Intron Coordinates:
27020520 - 27021683
Intron Length:
1164

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
ACATTCATAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.8
77.5
32.3
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
91.3
0.93
0.5
92.5
17.5
Minor 5ss
27.1
-2.6
2.9
31.6
42.4
Minor BPS
60.3
0.32
1.6
67.3
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019933
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019104
27020243 - 27031754
11512