About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_27021735_27031711_R

Intron Information:

Intron Rank:
134905
Intron Class:
major
Intron Phase:
Intron Coordinates:
27021735 - 27031711
Intron Length:
9977

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTGAG
5'SS Class:
major
3'SS Sequence:
GCTCTTTCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TGTTTCTTATTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
66.9
38.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
82
0.72
0.8
75.9
32.8
Minor 5ss
38.2
-1.3
3.1
48.8
47.4
Minor BPS
67.3
0.54
1.5
75.49
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019933
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019104
27020243 - 27031754
11512