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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_27042240_27044254_R

Intron Information:

Intron Rank:
151424
Intron Class:
major
Intron Phase:
Intron Coordinates:
27042240 - 27044254
Intron Length:
2015

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
TTCTCAATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTTTCCTGACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
79.3
34.5
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
80.4
0.68
0.8
74.4
33.9
Minor 5ss
42.5
-0.8
2.8
60.5
37.7
Minor BPS
73.4
0.81
1.7
93.08
35.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029021
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040738
27042022 - 27067140
25119