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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_27132501_27132775_R

Intron Information:

Intron Rank:
135233
Intron Class:
major
Intron Phase:
Intron Coordinates:
27132501 - 27132775
Intron Length:
275

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTTAGTGCC
5'SS Class:
major
3'SS Sequence:
TCCCATTGCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
AGTTCTCCATCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.2
65.7
38.6
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
68
0.4
1
60.3
40
Minor 5ss
30.8
-2.2
3
38.8
39
Minor BPS
44.9
-0.4
2
58.76
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020138
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033436
27131376 - 27133381
2006