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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_27160508_27167000_F

Intron Information:

Intron Rank:
125155
Intron Class:
major
Intron Phase:
Intron Coordinates:
27160508 - 27167000
Intron Length:
6493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAGAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTATTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TTTACTTTATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
0.9
71.9
31.5
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
82
0.72
0.7
77.6
30.8
Minor 5ss
30.1
-2.3
3.4
40.8
45.7
Minor BPS
64.4
0.43
1.6
74.73
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017405
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044728
27160353 - 27181972
21620